Generate lipid sets from lipid molecule names
gen_lipidsets(molecules, min_size = 2)A character vector containing lipid molecule names.
Minimum number of molecules in a set to be included in enrichment.
List of lipid sets
data(data_normalized)
molecules <- rowData(data_normalized)$Molecule
gen_lipidsets(molecules)
#> $Class_Cer
#> [1] "Cer d18:0/C16:0" "Cer d18:0/C18:0" "Cer d18:0/C20:0" "Cer d18:0/C22:0"
#> [5] "Cer d18:0/C24:0" "Cer d18:0/C24:1" "Cer d18:0/C24:2" "Cer d18:1/C16:0"
#> [9] "Cer d18:1/C16:1" "Cer d18:1/C18:0" "Cer d18:1/C18:1" "Cer d18:1/C20:0"
#> [13] "Cer d18:1/C20:1" "Cer d18:1/C20:2" "Cer d18:1/C22:0" "Cer d18:1/C22:1"
#> [17] "Cer d18:1/C22:2" "Cer d18:1/C22:3" "Cer d18:1/C22:4" "Cer d18:1/C22:5"
#> [21] "Cer d18:1/C22:6" "Cer d18:1/C24:0" "Cer d18:1/C24:1" "Cer d18:1/C24:2"
#> [25] "Cer d18:1/C26:0" "Cer d18:2/C20:0" "Cer d18:2/C22:0" "Cer d18:2/C24:1"
#> [29] "Cer d18:2/C24:2"
#>
#> $Class_LPC
#> [1] "LPC 14:0" "LPC 16:0" "LPC 16:1" "LPC 18:0" "LPC 18:1" "LPC 18:2"
#> [7] "LPC 20:0" "LPC 20:1" "LPC 20:2" "LPC 20:3" "LPC 20:4" "LPC 20:5"
#> [13] "LPC 22:0" "LPC 22:1" "LPC 22:2" "LPC 22:3" "LPC 22:4" "LPC 22:5"
#> [19] "LPC 22:6" "LPC 24:0" "LPC 24:1" "LPC 26:0"
#>
#> $Class_LPE
#> [1] "LPE 16:0" "LPE 16:1" "LPE 18:0" "LPE 18:1" "LPE 18:2" "LPE 20:0"
#> [7] "LPE 20:1" "LPE 20:2" "LPE 20:3" "LPE 20:4" "LPE 20:5" "LPE 22:4"
#> [13] "LPE 22:5" "LPE 22:6"
#>
#> $Class_PC
#> [1] "PC 30:0" "PC 30:1" "PC 30:2" "PC 32:0" "PC 32:1"
#> [6] "PC 32:2" "PC 34:0" "PC 34:1" "PC 34:2" "PC 34:3"
#> [11] "PC 34:4" "PC 34:5" "PC 36:0" "PC 36:1" "PC 36:2"
#> [16] "PC 36:3" "PC 36:4" "PC 36:5" "PC 36:6" "PC 38:0"
#> [21] "PC 38:1" "PC 38:2" "PC 38:3" "PC 38:4" "PC 38:5"
#> [26] "PC 38:6" "PC 38:7" "PC 40:0" "PC 40:1" "PC 40:4"
#> [31] "PC 40:5" "PC 40:6" "PC 40:7" "PC 40:8" "PC 40:2"
#> [36] "PC 40:3" "PC(O-32:0)" "PC(O-34:1)" "PC(O-34:2)" "PC(O-34:3)"
#> [41] "PC(O-36:2)" "PC(O-36:3)" "PC(O-36:4)" "PC(O-36:5)" "PC(O-38:0)"
#> [46] "PC(O-38:2)" "PC(O-38:3)" "PC(O-38:4)" "PC(O-38:5)" "PC(O-40:0)"
#> [51] "PC(O-40:1)" "PC(O-40:2)" "PC(O-40:3)" "PC(O-40:4)" "PC(O-40:5)"
#> [56] "PC(O-40:6)" "PC(O-40:7)" "PC(P-32:0)" "PC(P-34:1)" "PC(P-34:2)"
#> [61] "PC(P-34:3)" "PC(P-36:1)" "PC(P-36:2)" "PC(P-36:3)" "PC(P-36:4)"
#> [66] "PC(P-36:5)" "PC(P-38:0)" "PC(P-38:1)" "PC(P-38:2)" "PC(P-38:3)"
#> [71] "PC(P-38:4)" "PC(P-38:5)" "PC(P-38:6)" "PC(P-40:0)" "PC(P-40:1)"
#> [76] "PC(P-40:2)" "PC(P-40:3)" "PC(P-40:4)" "PC(P-40:5)" "PC(P-40:6)"
#>
#> $Class_PE
#> [1] "PE 32:0" "PE 32:1" "PE 32:2" "PE 34:1" "PE 34:2"
#> [6] "PE 34:3" "PE 36:0" "PE 36:1" "PE 36:2" "PE 36:3"
#> [11] "PE 36:4" "PE 36:5" "PE 38:0" "PE 38:1" "PE 38:2"
#> [16] "PE 38:3" "PE 38:4" "PE 38:5" "PE 38:6" "PE 40:0"
#> [21] "PE 40:5" "PE 40:6" "PE 40:7" "PE 34:1 NEG" "PE 36:1 NEG"
#> [26] "PE(O-34:0)" "PE(O-34:1)" "PE(O-34:2)" "PE(O-36:0)" "PE(O-36:1)"
#> [31] "PE(O-36:2)" "PE(O-36:3)" "PE(O-36:4)" "PE(O-36:5)" "PE(O-38:0)"
#> [36] "PE(O-38:1)" "PE(O-38:2)" "PE(O-38:3)" "PE(O-38:4)" "PE(O-38:5)"
#> [41] "PE(O-40:5)" "PE(O-40:6)" "PE(O-40:7)" "PE(P-32:0)" "PE(P-34:0)"
#> [46] "PE(P-34:1)" "PE(P-34:2)" "PE(P-36:0)" "PE(P-36:1)" "PE(P-36:2)"
#> [51] "PE(P-36:3)" "PE(P-36:4)" "PE(P-38:0)" "PE(P-38:1)" "PE(P-38:2)"
#> [56] "PE(P-38:3)" "PE(P-38:4)" "PE(P-38:5)" "PE(P-38:6)" "PE(P-40:5)"
#> [61] "PE(P-40:6)"
#>
#> $Class_PG
#> [1] "PG 18:1/16:1" "PG 18:2/16:0" "PG 16:0/18:1" "PG 20:4/16:1" "PG 20:4/16:0"
#> [6] "PG 18:2/18:1" "PG 18:1/18:1" "PG 18:2/18:0" "PG 18:1/18:0" "PG 16:1/16:0"
#> [11] "PG 18:0/16:0"
#>
#> $Class_PI
#> [1] "PI 32:1" "PI 32:2" "PI 34:0" "PI 34:1" "PI 34:2" "PI 36:0" "PI 36:1"
#> [8] "PI 36:2" "PI 36:3" "PI 38:1" "PI 38:2" "PI 38:3" "PI 38:4" "PI 38:5"
#> [15] "PI 40:3" "PI 40:4" "PI 40:5" "PI 32:3" "PI 34:3" "PI 36:4" "PI 38:6"
#> [22] "PI 40:6"
#>
#> $Class_SM
#> [1] "SM 18:1/16:0" "SM 18:1/16:1" "SM 18:1/18:0"
#> [4] "SM 18:1/18:1" "SM 18:1/18:2" "SM 18:1/20:0"
#> [7] "SM 18:1/20:1" "SM 18:1/20:2" "SM 18:1/22:0"
#> [10] "SM 18:1/22:1" "SM 18:1/22:2" "SM 18:1/22:3"
#> [13] "SM 18:1/24:0" "SM 18:1/24:1" "SM 18:1/24:2"
#> [16] "SM 18:1/26:1" "SM 18:1/16:2" "SM 18:1/22:4"
#> [19] "SM 18:1/22:5" "SM 18:1/22:6" "SM 18:1/16:0 ID264"
#> [22] "SM d18:0/16:0" "SM d18:0/18:0" "SM d18:0/20:0"
#> [25] "SM d18:0/22:0" "SM d18:0/24:0"
#>
#> $Class_SPH
#> [1] "Sa1P d 18:0" "So1P d 18:1"
#>
#> $total_cl_16
#> [1] "LPC 16:0" "LPC 16:1" "LPE 16:0" "LPE 16:1"
#>
#> $total_cl_18
#> [1] "LPC 18:0" "LPC 18:1" "LPC 18:2" "LPE 18:0" "LPE 18:1"
#> [6] "LPE 18:2" "Sa1P d 18:0" "So1P d 18:1"
#>
#> $total_cl_20
#> [1] "LPC 20:0" "LPC 20:1" "LPC 20:2" "LPC 20:3" "LPC 20:4" "LPC 20:5"
#> [7] "LPE 20:0" "LPE 20:1" "LPE 20:2" "LPE 20:3" "LPE 20:4" "LPE 20:5"
#>
#> $total_cl_22
#> [1] "LPC 22:0" "LPC 22:1" "LPC 22:2" "LPC 22:3" "LPC 22:4" "LPC 22:5"
#> [7] "LPC 22:6" "LPE 22:4" "LPE 22:5" "LPE 22:6"
#>
#> $total_cl_24
#> [1] "LPC 24:0" "LPC 24:1"
#>
#> $total_cl_30
#> [1] "PC 30:0" "PC 30:1" "PC 30:2"
#>
#> $total_cl_32
#> [1] "PC 32:0" "PC 32:1" "PC 32:2" "PE 32:0" "PE 32:1"
#> [6] "PE 32:2" "PI 32:1" "PI 32:2" "PG 16:1/16:0" "PI 32:3"
#> [11] "PE(P-32:0)" "PC(O-32:0)" "PC(P-32:0)"
#>
#> $total_cl_34
#> [1] "PC 34:0" "PC 34:1" "PC 34:2"
#> [4] "PC 34:3" "PC 34:4" "PC 34:5"
#> [7] "PE 34:1" "PE 34:2" "PE 34:3"
#> [10] "PG 18:1/16:1" "PG 18:2/16:0" "PG 16:0/18:1"
#> [13] "PI 34:0" "PI 34:1" "PI 34:2"
#> [16] "SM 18:1/16:0" "SM 18:1/16:1" "PG 18:0/16:0"
#> [19] "PI 34:3" "SM 18:1/16:2" "PE 34:1 NEG"
#> [22] "PE(O-34:0)" "PE(O-34:1)" "PE(O-34:2)"
#> [25] "PE(P-34:0)" "PE(P-34:1)" "PE(P-34:2)"
#> [28] "Cer d18:0/C16:0" "Cer d18:1/C16:0" "Cer d18:1/C16:1"
#> [31] "SM 18:1/16:0 ID264" "SM d18:0/16:0" "PC(O-34:1)"
#> [34] "PC(O-34:2)" "PC(O-34:3)" "PC(P-34:1)"
#> [37] "PC(P-34:2)" "PC(P-34:3)"
#>
#> $total_cl_36
#> [1] "PC 36:0" "PC 36:1" "PC 36:2" "PC 36:3"
#> [5] "PC 36:4" "PC 36:5" "PC 36:6" "PE 36:0"
#> [9] "PE 36:1" "PE 36:2" "PE 36:3" "PE 36:4"
#> [13] "PE 36:5" "PG 20:4/16:1" "PG 20:4/16:0" "PG 18:2/18:1"
#> [17] "PG 18:1/18:1" "PG 18:2/18:0" "PG 18:1/18:0" "PI 36:0"
#> [21] "PI 36:1" "PI 36:2" "PI 36:3" "SM 18:1/18:0"
#> [25] "SM 18:1/18:1" "SM 18:1/18:2" "PI 36:4" "PE 36:1 NEG"
#> [29] "PE(O-36:0)" "PE(O-36:1)" "PE(O-36:2)" "PE(O-36:3)"
#> [33] "PE(O-36:4)" "PE(O-36:5)" "PE(P-36:0)" "PE(P-36:1)"
#> [37] "PE(P-36:2)" "PE(P-36:3)" "PE(P-36:4)" "Cer d18:0/C18:0"
#> [41] "Cer d18:1/C18:0" "Cer d18:1/C18:1" "SM d18:0/18:0" "PC(O-36:2)"
#> [45] "PC(O-36:3)" "PC(O-36:4)" "PC(O-36:5)" "PC(P-36:1)"
#> [49] "PC(P-36:2)" "PC(P-36:3)" "PC(P-36:4)" "PC(P-36:5)"
#>
#> $total_cl_38
#> [1] "PC 38:0" "PC 38:1" "PC 38:2" "PC 38:3"
#> [5] "PC 38:4" "PC 38:5" "PC 38:6" "PC 38:7"
#> [9] "PE 38:0" "PE 38:1" "PE 38:2" "PE 38:3"
#> [13] "PE 38:4" "PE 38:5" "PE 38:6" "PI 38:1"
#> [17] "PI 38:2" "PI 38:3" "PI 38:4" "PI 38:5"
#> [21] "SM 18:1/20:0" "SM 18:1/20:1" "SM 18:1/20:2" "PI 38:6"
#> [25] "PE(O-38:0)" "PE(O-38:1)" "PE(O-38:2)" "PE(O-38:3)"
#> [29] "PE(O-38:4)" "PE(O-38:5)" "PE(P-38:0)" "PE(P-38:1)"
#> [33] "PE(P-38:2)" "PE(P-38:3)" "PE(P-38:4)" "PE(P-38:5)"
#> [37] "PE(P-38:6)" "Cer d18:0/C20:0" "Cer d18:1/C20:0" "Cer d18:1/C20:1"
#> [41] "Cer d18:1/C20:2" "Cer d18:2/C20:0" "SM d18:0/20:0" "PC(O-38:0)"
#> [45] "PC(O-38:2)" "PC(O-38:3)" "PC(O-38:4)" "PC(O-38:5)"
#> [49] "PC(P-38:0)" "PC(P-38:1)" "PC(P-38:2)" "PC(P-38:3)"
#> [53] "PC(P-38:4)" "PC(P-38:5)" "PC(P-38:6)"
#>
#> $total_cl_40
#> [1] "PC 40:0" "PC 40:1" "PC 40:4" "PC 40:5"
#> [5] "PC 40:6" "PC 40:7" "PC 40:8" "PE 40:0"
#> [9] "PE 40:5" "PE 40:6" "PE 40:7" "PI 40:3"
#> [13] "PI 40:4" "PI 40:5" "SM 18:1/22:0" "SM 18:1/22:1"
#> [17] "SM 18:1/22:2" "SM 18:1/22:3" "PI 40:6" "PC 40:2"
#> [21] "PC 40:3" "SM 18:1/22:4" "SM 18:1/22:5" "SM 18:1/22:6"
#> [25] "PE(O-40:5)" "PE(O-40:6)" "PE(O-40:7)" "PE(P-40:5)"
#> [29] "PE(P-40:6)" "Cer d18:0/C22:0" "Cer d18:1/C22:0" "Cer d18:1/C22:1"
#> [33] "Cer d18:1/C22:2" "Cer d18:1/C22:3" "Cer d18:1/C22:4" "Cer d18:1/C22:5"
#> [37] "Cer d18:1/C22:6" "Cer d18:2/C22:0" "SM d18:0/22:0" "PC(O-40:0)"
#> [41] "PC(O-40:1)" "PC(O-40:2)" "PC(O-40:3)" "PC(O-40:4)"
#> [45] "PC(O-40:5)" "PC(O-40:6)" "PC(O-40:7)" "PC(P-40:0)"
#> [49] "PC(P-40:1)" "PC(P-40:2)" "PC(P-40:3)" "PC(P-40:4)"
#> [53] "PC(P-40:5)" "PC(P-40:6)"
#>
#> $total_cl_42
#> [1] "SM 18:1/24:0" "SM 18:1/24:1" "SM 18:1/24:2" "Cer d18:0/C24:0"
#> [5] "Cer d18:0/C24:1" "Cer d18:0/C24:2" "Cer d18:1/C24:0" "Cer d18:1/C24:1"
#> [9] "Cer d18:1/C24:2" "Cer d18:2/C24:1" "Cer d18:2/C24:2" "SM d18:0/24:0"
#>
#> $total_cl_44
#> [1] "SM 18:1/26:1" "Cer d18:1/C26:0"
#>
#> $total_cs_0
#> [1] "LPC 14:0" "LPC 16:0" "LPC 18:0" "LPC 20:0"
#> [5] "LPC 22:0" "LPC 24:0" "LPC 26:0" "LPE 16:0"
#> [9] "LPE 18:0" "LPE 20:0" "PC 30:0" "PC 32:0"
#> [13] "PC 34:0" "PC 36:0" "PC 38:0" "PC 40:0"
#> [17] "PE 32:0" "PE 36:0" "PE 38:0" "PE 40:0"
#> [21] "PI 34:0" "PI 36:0" "PG 18:0/16:0" "PE(O-34:0)"
#> [25] "PE(O-36:0)" "PE(O-38:0)" "PE(P-32:0)" "PE(P-34:0)"
#> [29] "PE(P-36:0)" "PE(P-38:0)" "Sa1P d 18:0" "Cer d18:0/C16:0"
#> [33] "Cer d18:0/C18:0" "Cer d18:0/C20:0" "Cer d18:0/C22:0" "Cer d18:0/C24:0"
#> [37] "SM d18:0/16:0" "SM d18:0/18:0" "SM d18:0/20:0" "SM d18:0/22:0"
#> [41] "SM d18:0/24:0" "PC(O-32:0)" "PC(O-38:0)" "PC(O-40:0)"
#> [45] "PC(P-32:0)" "PC(P-38:0)" "PC(P-40:0)"
#>
#> $total_cs_1
#> [1] "LPC 16:1" "LPC 18:1" "LPC 20:1"
#> [4] "LPC 22:1" "LPC 24:1" "LPE 16:1"
#> [7] "LPE 18:1" "LPE 20:1" "PC 30:1"
#> [10] "PC 32:1" "PC 34:1" "PC 36:1"
#> [13] "PC 38:1" "PC 40:1" "PE 32:1"
#> [16] "PE 34:1" "PE 36:1" "PE 38:1"
#> [19] "PG 16:0/18:1" "PG 18:1/18:0" "PI 32:1"
#> [22] "PI 34:1" "PI 36:1" "PI 38:1"
#> [25] "SM 18:1/16:0" "SM 18:1/18:0" "SM 18:1/20:0"
#> [28] "SM 18:1/22:0" "SM 18:1/24:0" "PG 16:1/16:0"
#> [31] "PE 34:1 NEG" "PE 36:1 NEG" "PE(O-34:1)"
#> [34] "PE(O-36:1)" "PE(O-38:1)" "PE(P-34:1)"
#> [37] "PE(P-36:1)" "PE(P-38:1)" "So1P d 18:1"
#> [40] "Cer d18:0/C24:1" "Cer d18:1/C16:0" "Cer d18:1/C18:0"
#> [43] "Cer d18:1/C20:0" "Cer d18:1/C22:0" "Cer d18:1/C24:0"
#> [46] "Cer d18:1/C26:0" "SM 18:1/16:0 ID264" "PC(O-34:1)"
#> [49] "PC(O-40:1)" "PC(P-34:1)" "PC(P-36:1)"
#> [52] "PC(P-38:1)" "PC(P-40:1)"
#>
#> $total_cs_2
#> [1] "LPC 18:2" "LPC 20:2" "LPC 22:2" "LPE 18:2"
#> [5] "LPE 20:2" "PC 30:2" "PC 32:2" "PC 34:2"
#> [9] "PC 36:2" "PC 38:2" "PE 32:2" "PE 34:2"
#> [13] "PE 36:2" "PE 38:2" "PG 18:1/16:1" "PG 18:2/16:0"
#> [17] "PG 18:1/18:1" "PG 18:2/18:0" "PI 32:2" "PI 34:2"
#> [21] "PI 36:2" "PI 38:2" "SM 18:1/16:1" "SM 18:1/18:1"
#> [25] "SM 18:1/20:1" "SM 18:1/22:1" "SM 18:1/24:1" "SM 18:1/26:1"
#> [29] "PC 40:2" "PE(O-34:2)" "PE(O-36:2)" "PE(O-38:2)"
#> [33] "PE(P-34:2)" "PE(P-36:2)" "PE(P-38:2)" "Cer d18:0/C24:2"
#> [37] "Cer d18:1/C16:1" "Cer d18:1/C18:1" "Cer d18:1/C20:1" "Cer d18:1/C22:1"
#> [41] "Cer d18:1/C24:1" "Cer d18:2/C20:0" "Cer d18:2/C22:0" "PC(O-34:2)"
#> [45] "PC(O-36:2)" "PC(O-38:2)" "PC(O-40:2)" "PC(P-34:2)"
#> [49] "PC(P-36:2)" "PC(P-38:2)" "PC(P-40:2)"
#>
#> $total_cs_3
#> [1] "LPC 20:3" "LPC 22:3" "LPE 20:3" "PC 34:3"
#> [5] "PC 36:3" "PC 38:3" "PE 34:3" "PE 36:3"
#> [9] "PE 38:3" "PG 18:2/18:1" "PI 36:3" "PI 38:3"
#> [13] "PI 40:3" "SM 18:1/18:2" "SM 18:1/20:2" "SM 18:1/22:2"
#> [17] "SM 18:1/24:2" "PI 32:3" "PI 34:3" "PC 40:3"
#> [21] "SM 18:1/16:2" "PE(O-36:3)" "PE(O-38:3)" "PE(P-36:3)"
#> [25] "PE(P-38:3)" "Cer d18:1/C20:2" "Cer d18:1/C22:2" "Cer d18:1/C24:2"
#> [29] "Cer d18:2/C24:1" "PC(O-34:3)" "PC(O-36:3)" "PC(O-38:3)"
#> [33] "PC(O-40:3)" "PC(P-34:3)" "PC(P-36:3)" "PC(P-38:3)"
#> [37] "PC(P-40:3)"
#>
#> $total_cs_4
#> [1] "LPC 20:4" "LPC 22:4" "LPE 20:4" "LPE 22:4"
#> [5] "PC 34:4" "PC 36:4" "PC 38:4" "PC 40:4"
#> [9] "PE 36:4" "PE 38:4" "PG 20:4/16:0" "PI 38:4"
#> [13] "PI 40:4" "SM 18:1/22:3" "PI 36:4" "PE(O-36:4)"
#> [17] "PE(O-38:4)" "PE(P-36:4)" "PE(P-38:4)" "Cer d18:1/C22:3"
#> [21] "Cer d18:2/C24:2" "PC(O-36:4)" "PC(O-38:4)" "PC(O-40:4)"
#> [25] "PC(P-36:4)" "PC(P-38:4)" "PC(P-40:4)"
#>
#> $total_cs_5
#> [1] "LPC 20:5" "LPC 22:5" "LPE 20:5" "LPE 22:5"
#> [5] "PC 34:5" "PC 36:5" "PC 38:5" "PC 40:5"
#> [9] "PE 36:5" "PE 38:5" "PE 40:5" "PG 20:4/16:1"
#> [13] "PI 38:5" "PI 40:5" "SM 18:1/22:4" "PE(O-36:5)"
#> [17] "PE(O-38:5)" "PE(O-40:5)" "PE(P-38:5)" "PE(P-40:5)"
#> [21] "Cer d18:1/C22:4" "PC(O-36:5)" "PC(O-38:5)" "PC(O-40:5)"
#> [25] "PC(P-36:5)" "PC(P-38:5)" "PC(P-40:5)"
#>
#> $total_cs_6
#> [1] "LPC 22:6" "LPE 22:6" "PC 36:6" "PC 38:6"
#> [5] "PC 40:6" "PE 38:6" "PE 40:6" "PI 38:6"
#> [9] "PI 40:6" "SM 18:1/22:5" "PE(O-40:6)" "PE(P-38:6)"
#> [13] "PE(P-40:6)" "Cer d18:1/C22:5" "PC(O-40:6)" "PC(P-38:6)"
#> [17] "PC(P-40:6)"
#>
#> $total_cs_7
#> [1] "PC 38:7" "PC 40:7" "PE 40:7" "SM 18:1/22:6"
#> [5] "PE(O-40:7)" "Cer d18:1/C22:6" "PC(O-40:7)"
#>